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| Aspergillus Gene
Nomenclature Guide |
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As a community database, AspGD will not invent any gene name
standards of our own, but we will use and enforce guidelines developed
by consensus in the community.
Community guidelines for gene names, developed during discussions
around the meeting of the Aspergillus fumigatus genome
sequencing group in 2000 and the 1st International Aspergillus
Meeting in 2004, are posted
on the www.aspergillus.org.uk web site. The first name published in the scientific
literature for any given gene will be used as the standard gene name in AspGD. In addition, identifiers in use by GenBank or by the Broad Institute have been assigned as gene aliases. (Nomenclature issues related to the incorporation of the Broad Institute reannotation during preparation of Version 5 of the Aspergillus nidulans reference annotation are described in more detail in the AspGD Sequence Documentation.)
We welcome feedback by email
about AspGD gene name policy issues, such as:
- Should AspGD provide a Gene Name registration system, similar
to the system in place at
the Candida Genome Database?
- Would the Aspergillus research community like us to enforce guidelines for the
format of standard gene names to be used in AspGD?
- Should AspGD mediate discussions about proposed changes to
Standard Gene Names? At the Saccharomyces and Candida
Genome Databases, gene names may be changed if there is consensus
among the groups who study the gene, and the database staff serve as
facilitators during this process. AspGD would be happy to assume a
similar role for the Aspergillus community, if the community would
like us to do so.
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