Aspergillus fumigatus Af293 Genome Snapshot/Overview

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This page provides information on the status of the A. fumigatus Af293 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

Contents

1. Graphical View of Protein Coding Genes
2. Genome Inventory
3. Summary of Chromosome Sequence and Annotation Updates
4. Summary of GO annotations
5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of Apr 17, 2014)

9322 ORFs, 95.29% 461 ORFs, 4.71%

Genome Inventory (as of Apr 17, 2014)

This table reports the number and types of features annotated in AspGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in AspGD are not listed in the table below.)

Feature TypeTotalChromosome number
Chr1_A_fumigatus_Af293Chr2_A_fumigatus_Af293Chr3_A_fumigatus_Af293Chr4_A_fumigatus_Af293Chr5_A_fumigatus_Af293Chr6_A_fumigatus_Af293Chr7_A_fumigatus_Af293Chr8_A_fumigatus_Af293Nuclear genomeMitochondrial genome
Total ORFs9783163516371387124313631241642619976716
Verified ORFs46160786567577222404610
Uncharacterized ORFs9322157515591322117613061169620579930616
tRNA205322526133517131717827
rRNA3443934614340
snoRNA29112271420290
ncRNA1241230020120
snRNA94112010090
Pseudogenes10000010010
Total100731690166914271271140312706606401003043
Chromosome length (bp)29,420,1424,918,9794,844,3724,079,1673,927,2243,948,4413,778,7362,058,3341,833,12429,388,37731,765


Summary of Chromosome Sequence and Annotation updates

As new data become available, AspGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the AspGD
Download Data page. Detailed information about the sequence data in AspGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to AspGD curators. At this time, AspGD does not record sequence variation between the genome reference strain and other strains of A. fumigatus Af293.

Chromosome HistorySequence UpdatesAnnotation Updates

Total Number

Last Update

Total Number

Last Update

Chr1_A_fumigatus_Af293

0

N/A

52

2013-03-14

Chr2_A_fumigatus_Af293

0

N/A

48

2013-03-14

Chr3_A_fumigatus_Af293

0

N/A

42

2013-03-14

Chr4_A_fumigatus_Af293

0

N/A

59

2013-03-14

Chr5_A_fumigatus_Af293

0

N/A

53

2013-03-14

Chr6_A_fumigatus_Af293

0

N/A

44

2013-03-14

Chr7_A_fumigatus_Af293

0

N/A

31

2013-03-14

Chr8_A_fumigatus_Af293

0

N/A

33

2013-03-14

mito_A_fumigatus_Af293

8

2012-03-12

1

2012-03-06

Summary of Gene Ontology (GO) annotations (as of Apr 17, 2014)

This table displays the current total number of A. fumigatus Af293 gene products that have been annotated to one or more terms in each GO aspect (Process, Function, Component). These counts include GO annotations made for ORFs classified as either "Verified" or "Uncharacterized", transposable element genes, and all RNA gene products.

OntologyDetails of Annotations
Total Number of AnnotationsGraphical View
Molecular Function5524Go to Molecular Function Graph
Cellular Component4638Go to Cellular Component Graph
Biological Process5560Go to Biological Process Graph
All Ontologies15722 

Distribution of Gene Products by Process, Function, and Component (as of Apr 17, 2014)

These graphical views representing the GO annotation state of the entire genome are provided using a GO Slim (a high-level subset of Gene Ontology terms that allows grouping of genes into broad categories such as "DNA replication", "protein kinase activity", or "nucleus") tailored to Aspergillus biology. GO Slim terms representing broad categories from a single aspect are listed for each graph, along with the percentage of A. fumigatus Af293 gene products annotated to a specific term that maps up the ontology to the GO Slim term. Note that some gene products may be represented more than once, if they are annotated to one or more GO terms that map to more than one GO Slim term.

More information on GO and GO Slim can be found at SGD's GO help page or in the Gene Ontology documentation. To obtain the GO data summarized in these graphs, please contact AspGD curators or use the GO Slim Mapper. An alternative processing of the same data, with some redundancies removed, is available in the Aspergillus GO Slim Annotations File on the AspGD Download Data page.

Distribution of Gene Products among Molecular Function Categories

Distribution of Gene Products among Cellular Component Categories

Distribution of Gene Products among Biological Process Categories



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