Aspergillus nidulans FGSC A4 Genome Snapshot/Overview

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This page provides information on the status of the A. nidulans FGSC A4 genome. Data on this page are updated once a day. All the data displayed on this page are available in one or more files (Chromosomal Feature File; GO Annotations File) on the AspGD Download Data page. The Advanced Search tool can also be used to retrieve chromosomal features that match specific criteria.

Contents

1. Graphical View of Protein Coding Genes
2. Genome Inventory
3. Summary of Chromosome Sequence and Annotation Updates
4. Summary of GO annotations
5. Distribution of Gene Products by Process, Function, and Component

Graphical View of Protein Coding Genes (as of Sep 23, 2014)

9529 ORFs, 89.24% 1149 ORFs, 10.76%

Genome Inventory (as of Sep 23, 2014)

This table reports the number and types of features annotated in AspGD, per chromosome (excluding unmapped features). To get a list of all features of a certain type (e.g., Verified ORF, tRNA, etc.), select that feature type. To access more information on the individual chromosome (e.g., sequence, a listing of all features on that chromosome, etc.), select each chromosome name. (Feature types that are not yet annotated in AspGD are not listed in the table below.)

Feature TypeTotalChromosome number
ChrIII_A_nidulans_FGSC_A4ChrII_A_nidulans_FGSC_A4ChrIV_A_nidulans_FGSC_A4ChrI_A_nidulans_FGSC_A4ChrVIII_A_nidulans_FGSC_A4ChrVII_A_nidulans_FGSC_A4ChrVI_A_nidulans_FGSC_A4ChrV_A_nidulans_FGSC_A4Nuclear genomeMitochondrial genome
Total ORFs10678126014561004134017391586116511081065820
Verified ORFs11491331451031582191791139611463
Uncharacterized ORFs95291127131190111821520140710521012951217
tRNA20811268184732132518028
Pseudogenes627806171095620
uORF3173046344310
ncRNA20000100011
Total10983128514931012136818101631119111421093251
Chromosome length (bp)30,517,2183,470,8974,070,0602,887,7383,759,2084,934,0934,550,2183,407,9443,403,83330,483,99133,227


Summary of Chromosome Sequence and Annotation updates

As new data become available, AspGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each chromosome.

Select the chromosome number to retrieve the corresponding Chromosome History page, which provides details on all the updates for that chromosome. Current and past versions of the sequence and annotation are also available on the AspGD
Download Data page. Detailed information about the sequence data in AspGD, including the sources from which sequence-based information are dervived, and a history of the reference strain genome assemblies, is found on the Sequence Documentation page.

If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to AspGD curators. At this time, AspGD does not record sequence variation between the genome reference strain and other strains of A. nidulans FGSC A4.

Chromosome HistorySequence UpdatesAnnotation Updates

Total Number

Last Update

Total Number

Last Update

ChrIII_A_nidulans_FGSC_A4

2

2012-05-21

1348

2014-06-17

ChrII_A_nidulans_FGSC_A4

2

2011-12-16

1603

2013-01-24

ChrIV_A_nidulans_FGSC_A4

0

N/A

1100

2013-01-24

ChrI_A_nidulans_FGSC_A4

0

N/A

1467

2013-01-24

ChrVIII_A_nidulans_FGSC_A4

0

N/A

1919

2013-09-25

ChrVII_A_nidulans_FGSC_A4

1

2013-03-27

1747

2013-01-24

ChrVI_A_nidulans_FGSC_A4

0

N/A

1277

2013-01-24

ChrV_A_nidulans_FGSC_A4

1

2010-05-21

1244

2013-01-24

mito_A_nidulans_FGSC_A4

0

N/A

6

2012-08-30

Summary of Gene Ontology (GO) annotations (as of Sep 23, 2014)

This table displays the current total number of A. nidulans FGSC A4 gene products that have been annotated to one or more terms in each GO aspect (Process, Function, Component). These counts include GO annotations made for ORFs classified as either "Verified" or "Uncharacterized", transposable element genes, and all RNA gene products.

OntologyDetails of Annotations
Total Number of AnnotationsGraphical View
Molecular Function6025Go to Molecular Function Graph
Cellular Component4912Go to Cellular Component Graph
Biological Process6125Go to Biological Process Graph
All Ontologies17062 

Distribution of Gene Products by Process, Function, and Component (as of Sep 23, 2014)

These graphical views representing the GO annotation state of the entire genome are provided using a GO Slim (a high-level subset of Gene Ontology terms that allows grouping of genes into broad categories such as "DNA replication", "protein kinase activity", or "nucleus") tailored to Aspergillus biology. GO Slim terms representing broad categories from a single aspect are listed for each graph, along with the percentage of A. nidulans FGSC A4 gene products annotated to a specific term that maps up the ontology to the GO Slim term. Note that some gene products may be represented more than once, if they are annotated to one or more GO terms that map to more than one GO Slim term.

More information on GO and GO Slim can be found at SGD's GO help page or in the Gene Ontology documentation. To obtain the GO data summarized in these graphs, please contact AspGD curators or use the GO Slim Mapper. An alternative processing of the same data, with some redundancies removed, is available in the Aspergillus GO Slim Annotations File on the AspGD Download Data page.

Distribution of Gene Products among Molecular Function Categories

Distribution of Gene Products among Cellular Component Categories

Distribution of Gene Products among Biological Process Categories



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