Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

Result Page : 1234567Next




ReferenceLiterature TopicSpeciesGenes Addressed
Krohn NG, et al. (2014) The Aspergillus nidulans ATM Kinase Regulates Mitochondrial Function, Glucose Uptake and the Carbon Starvation Response. G3 (Bethesda) 4(1):49-62
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Genomic expression studyA. nidulans |atmA |snf1 |tubA |xprG
Adav SS, et al. (2013) Proteomic Analysis of Temperature Dependent Extracellular Proteins from Aspergillus fumigatus Grown under Solid-State Culture Condition. J Proteome Res 12(6):2715-31
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Large-scale protein detectionA. fumigatus |Afu1g01120 |Afu1g01300 |Afu1g01660 |Afu1g04730 |Afu1g04820 |Afu1g06910 |Afu1g09110 |Afu1g09470 |Afu1g09900 |Afu1g10790 |Afu1g11400 |Afu1g12560 |Afu1g14710 |Afu1g14950 |MORE
Amich J, et al. (2013) Regulation of Sulphur Assimilation Is Essential for Virulence and Affects Iron Homeostasis of the Human-Pathogenic Mould Aspergillus fumigatus. PLoS Pathog 9(8):e1003573
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Genomic expression studyA. fumigatus |metR
Andersen MR, et al. (2013) Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1):E99-107
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Genomic expression studyA. nidulans |AN11080 |AN1242 |AN9002
Colabardini AC, et al. (2013) Functional characterization of Aspergillus nidulans ypkA, a homologue of the mammalian kinase SGK. PLoS One 8(3):e57630
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Genomic expression studyA. nidulans |AN0273 |AN10790 |AN11048 |AN12017 |AN1825 |AN1857 |AN1858 |AN1865 |AN1907 |AN2045 |AN2200 |AN2201 |AN2781 |AN2860 |MORE
Coradetti ST, et al. (2013) Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. Microbiologyopen 2(4):595-609
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Genomic expression studyA. nidulans |AN0245 |AN0250 |AN0423 |AN0732 |AN0771 |AN0847 |AN10124 |AN1066 |AN1163 |AN1792 |AN2112 |AN2528 |AN2814 |AN2951 |MORE
Crowley S, et al. (2013) Transcriptomic and morphological profiling of Aspergillus fumigatus Af293 in response to antifungal activity produced by Lactobacillus plantarum 16. Microbiology 159(Pt Pt_10):2014-2024
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Genomic expression study
De Souza CP, et al. (2013) Functional analysis of the Aspergillus nidulans kinome. PLoS One 8(3):e58008
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Large-scale phenotype analysisA. nidulans |AN2054 |AN4536 |AN5815 |ankA |atg1 |atmA |bckA |cak1 |cdc7 |cdk7 |chkA |chkB |chkC |cka1 |MORE
Fuller KK, et al. (2013) The fungal pathogen Aspergillus fumigatus regulates growth, metabolism, and stress resistance in response to light. MBio 4(2)
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Genomic expression studyA. fumigatus |fphA |fphB |lreA
A. nidulans |fphA |lreA
Garzia A, et al. (2013) Transcriptional changes in the transition from vegetative cells to asexual development in the model fungus Aspergillus nidulans. Eukaryot Cell 12(2):311-21
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Genomic expression studyA. nidulans |AN10039 |AN11080 |AN11194 |AN11202 |AN11313 |AN11820 |AN12277 |AN12331 |AN1320 |AN1594 |AN2064 |AN2808 |AN2841 |AN3175 |MORE
Krijgsheld P, et al. (2013) Deletion of flbA Results in Increased Secretome Complexity and Reduced Secretion Heterogeneity in Colonies of Aspergillus niger. J Proteome Res 12(4):1808-19
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Genomic expression studyA. niger |An01g01540 |An01g03090 |An01g06280 |An01g11670 |An01g13600 |An01g14600 |An02g01550 |An02g03310 |An02g06720 |An02g08560 |An02g09090 |An02g11620 |An02g13750 |An03g05210 |MORE
Kubitschek-Barreira PH, et al. (2013) Differential proteomic analysis of Aspergillus fumigatus morphotypes reveals putative drug targets. J Proteomics 78:522-34
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Large-scale protein detectionA. fumigatus |Afu1g04070 |Afu1g05080 |Afu1g10570 |Afu1g16840 |Afu2g10070 |Afu3g06210 |Afu3g08940 |Afu3g09290 |Afu4g06910 |Afu5g04160 |Afu5g06390 |Afu5g10570 |Afu5g14680 |Afu6g02470 |MORE
Kwon MJ, et al. (2013) The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger. PLoS One 8(7):e68946
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Genomic expression studyA. niger |abpA |racA |slaB |sncA
Liu D, et al. (2013) Secretome diversity and quantitative analysis of cellulolytic Aspergillus fumigatus Z5 in the presence of different carbon sources. Biotechnol Biofuels 6(1):149
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Large-scale protein detection
Martins I, et al. (2013) Proteomic alterations induced by ionic liquids in Aspergillus nidulans and Neurospora crassa. J Proteomics 94:262-78
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Large-scale protein detectionA. nidulans |AN0285 |AN0297 |AN0567 |AN0688 |AN1003 |AN11015 |AN11227 |AN1523 |AN1534 |AN3739 |AN4015 |AN4772 |AN7331 |AN7484 |MORE
Novodvorska M, et al. (2013) Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing. BMC Genomics 14:246
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Genomic expression studyA. niger |An01g08850 |An01g09270 |An01g10880 |An02g04330 |An02g14590 |An03g02430 |An03g05590 |An04g04750 |An04g04890 |An04g05300 |An07g01950 |An07g05790 |An07g09190 |An08g00210 |MORE
Shin KS, et al. (2013) Comparative proteomic analyses reveal that FlbA down-regulates gliT expression and SOD activity in Aspergillus fumigatus. J Proteomics 87:40-52
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Genomic expression studyA. nidulans |flbA
A. fumigatus |Afu1g04130 |Afu1g05080 |Afu1g09780 |Afu1g14200 |Afu4g07940 |Afu6g03810 |Afu8g00930 |acoA |act1 |acuF |aspf3 |cat1 |dppV |exg13 |MORE
Sibthorp C, et al. (2013) Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters. BMC Genomics 14:847
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Genomic expression studyA. nidulans |meaB
Sun X, et al. (2013) pyrG is required for maintaining stable cellular uracil level and normal sporulation pattern under excess uracil stress in Aspergillus nidulans. Sci China Life Sci 56(5):467-75
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Genomic expression studyA. nidulans |AN0841 |AN10299 |AN10399 |AN10949 |AN10964 |AN11246 |AN12070 |AN1378 |AN1510 |AN1608 |AN1879 |AN2260 |AN2555 |AN2578 |MORE
Szilagyi M, et al. (2013) Transcriptome changes initiated by carbon starvation in Aspergillus nidulans. Microbiology 159(Pt 1):176-90
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Genomic expression studyA. nidulans |AN0230 |AN0245 |AN0779 |AN0940 |AN10444 |AN10585 |AN10779 |AN11062 |AN1117 |AN1131 |AN11510 |AN11897 |AN1418 |AN1428 |MORE
Wiedner SD, et al. (2013) Disparate proteome responses of pathogenic and nonpathogenic aspergilli to human serum measured by activity-based protein profiling (ABPP). Mol Cell Proteomics 12(7):1791-805
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Large-scale protein detectionA. fumigatus |Afu1g10970 |Afu2g01660 |Afu2g05740 |Afu2g08670 |Afu2g10620 |Afu3g06140 |Afu3g09590 |Afu4g04660 |Afu4g09740 |Afu5g02360 |Afu6g11890 |Afu7g03870 |Afu8g02840 |cyp51A |MORE
Yan J, et al. (2013) Transcriptome and biochemical analysis reveals that suppression of GPI-anchor synthesis leads to autophagy and possible necroptosis in Aspergillus fumigatus. PLoS One 8(3):e59013
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Genomic expression studyA. fumigatus |Afu1g00530 |Afu1g05790 |Afu1g05970 |Afu1g09650 |Afu1g10590 |Afu1g10980 |Afu1g11600 |Afu1g13250 |Afu1g14290 |Afu1g15670 |Afu1g17560 |Afu2g00670 |Afu2g01600 |Afu2g01710 |MORE
Zhao G, et al. (2013) Comparative genomic analysis of Aspergillus oryzae strains 3.042 and RIB40 for soy sauce fermentation. Int J Food Microbiol 164(2-3):148-54
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Computational analysisA. oryzae |AO090023000256 |AO090023000257 |AO090023000258 |AO090023000259 |AO090023000260 |AO090023000262 |AO090023000263 |AO090023000264 |AO090023000265 |AO090023000266 |AO090023000267 |AO090023000268 |AO090023000269 |AO090023000271 |MORE
Zhao G, et al. (2013) Comparison and Analysis of the Genomes of Two Aspergillus oryzae Strains. J Agric Food Chem 61(32):7805-9
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Other genomic analysis
de Souza WR, et al. (2013) Identification of metabolic pathways influenced by the G-protein coupled receptors GprB and GprD in Aspergillus nidulans. PLoS One 8(5):e62088
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Genomic expression studyA. nidulans |AN0216 |AN11510 |AN2606 |AN5046 |AN6487 |AN8659 |AN9127 |AN9174 |AN9300 |cpcA |dbaD |gprD |mirA |mirB |MORE
de Souza WR, et al. (2013) The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in d-xylose, l-arabinose and steam-exploded sugarcane bagasse. Fungal Genet Biol 60:29-45
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Genomic expression studyA. niger |araR |xlnR
van Leeuwen MR, et al. (2013) Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles. Stud Mycol 74(1):59-70
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Genomic expression studyA. niger |An01g01540 |An01g02500 |An01g10790 |An01g13350 |An01g15190 |An02g06560 |An02g07070 |An02g07350 |An02g07610 |An02g08110 |An03g02430 |An03g06220 |An04g01430 |An04g02110 |MORE
van Munster JM, et al. (2013) Chitinases CtcB and CfcI modify the cell wall in sporulating aerial mycelium of Aspergillus niger. Microbiology 159(Pt 9):1853-67
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Genomic expression studyA. niger |An01g01870 |An01g03340 |An01g04570 |An01g09510 |An01g11670 |An02g00610 |An02g00850 |An02g02980 |An02g13180 |An02g13520 |An03g00500 |An03g00740 |An03g01050 |An03g02880 |MORE
Barker BM, et al. (2012) Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter. BMC Genomics 13:62
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Large-scale protein detection, Genomic expression studyA. fumigatus |Afu2g00450 |Afu2g00720 |Afu2g06000 |Afu2g13800 |Afu2g16330 |Afu3g07150 |Afu3g14170 |Afu4g03410 |Afu4g06620 |Afu4g08600 |Afu4g13500 |Afu5g01030 |Afu6g07430 |Afu6g09770 |MORE
Carberry S, et al. (2012) Gliotoxin effects on fungal growth: mechanisms and exploitation. Fungal Genet Biol 49(4):302-12
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Large-scale protein detectionA. fumigatus |Afu1g04620 |Afu1g11190 |Afu1g14200 |Afu2g10030 |Afu3g01580 |Afu3g12560 |Afu4g08710 |Afu4g09030 |Afu5g02020 |Afu5g04330 |Afu5g09910 |Afu5g14680 |Afu6g08360 |Afu6g10660 |MORE
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