| Reference | Literature Topic | Species | Genes Addressed |
|---|
Andersen MR, et al. (2013) Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1):E99-107
   | Genomic expression study | A. nidulans | |AN11080 |AN1242 |
Colabardini AC, et al. (2013) Functional Characterization of Aspergillus nidulans ypkA, a Homologue of the Mammalian Kinase SGK. PLoS One 8(3):e57630
| Genomic expression study | A. nidulans | |AN0273 |AN10790 |AN11048 |AN12017 |AN1825 |AN1857 |AN1858 |AN1865 |AN1907 |AN2045 |AN2200 |AN2201 |AN2781 |AN2860 |MORE |
De Souza CP, et al. (2013) Functional Analysis of the Aspergillus nidulans Kinome. PLoS One 8(3):e58008
| Large-scale phenotype analysis | A. nidulans | |AN2054 |AN4536 |AN5815 |ankA |atg1 |atmA |bckA |cak1 |cdc7 |cdk7 |chkA |chkB |chkC |cka1 |MORE |
Garzia A, et al. (2013) Transcriptional Changes in the Transition from Vegetative Cells to Asexual Development in the Model Fungus Aspergillus nidulans. Eukaryot Cell 12(2):311-21
| Genomic expression study | A. nidulans | |AN10039 |AN11080 |AN11194 |AN11202 |AN11313 |AN11820 |AN12277 |AN12331 |AN1320 |AN1594 |AN2064 |AN2808 |AN2841 |AN3175 |MORE |
Krijgsheld P, et al. (2013) Deletion of flbA results in increased secretome complexity and reduced secretion heterogeneity in colonies of Aspergillus niger. J Proteome Res
| Genomic expression study | A. niger | |An01g01540 |An01g03090 |An01g06280 |An01g11670 |An01g13600 |An01g14600 |An02g01550 |An02g03310 |An02g06720 |An02g08560 |An02g09090 |An02g11620 |An02g13750 |An03g05210 |MORE |
Kubitschek-Barreira PH, et al. (2013) Differential proteomic analysis of Aspergillus fumigatus morphotypes reveals putative drug targets. J Proteomics 78:522-34
| Large-scale protein detection | A. fumigatus | |Afu1g04070 |Afu1g05080 |Afu1g10570 |Afu1g16840 |Afu2g10070 |Afu3g06210 |Afu3g08940 |Afu3g09290 |Afu4g06910 |Afu5g04160 |Afu5g06390 |Afu5g10570 |Afu5g14680 |Afu6g02470 |MORE |
Szilagyi M, et al. (2013) Transcriptome changes initiated by carbon starvation in Aspergillus nidulans. Microbiology 159(Pt 1):176-90
| Genomic expression study | A. nidulans | |AN0230 |AN0245 |AN0779 |AN0940 |AN10444 |AN10585 |AN10779 |AN11062 |AN1117 |AN1131 |AN11510 |AN11897 |AN1418 |AN1428 |MORE |
Yan J, et al. (2013) Transcriptome and Biochemical Analysis Reveals That Suppression of GPI-Anchor Synthesis Leads to Autophagy and Possible Necroptosis in Aspergillus fumigatus. PLoS One 8(3):e59013
| Genomic expression study | A. fumigatus | |Afu1g00530 |Afu1g05790 |Afu1g05970 |Afu1g09650 |Afu1g10590 |Afu1g10980 |Afu1g11600 |Afu1g13250 |Afu1g14290 |Afu1g15670 |Afu1g17560 |Afu2g00670 |Afu2g01600 |Afu2g01710 |MORE |
van Leeuwen MR, et al. (2013) Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles. Stud Mycol 74(1):59-70
| Genomic expression study | A. niger | |An01g01540 |An01g02500 |An01g10790 |An01g13350 |An01g15190 |An02g06560 |An02g07070 |An02g07350 |An02g07610 |An02g08110 |An03g02430 |An03g06220 |An04g01430 |An04g02110 |MORE |
Barker BM, et al. (2012) Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter. BMC Genomics 13:62
| Large-scale protein detection, Genomic expression study | A. fumigatus | |Afu2g00450 |Afu2g00720 |Afu2g06000 |Afu2g13800 |Afu2g16330 |Afu3g07150 |Afu3g14170 |Afu4g03410 |Afu4g06620 |Afu4g08600 |Afu4g13500 |Afu5g01030 |Afu6g07430 |Afu6g09770 |MORE |
Carberry S, et al. (2012) Gliotoxin effects on fungal growth: Mechanisms and exploitation. Fungal Genet Biol 49(4):302-12
| Large-scale protein detection | A. fumigatus | |Afu1g04620 |Afu1g11190 |Afu1g14200 |Afu2g10030 |Afu3g01580 |Afu3g12560 |Afu4g08710 |Afu4g09030 |Afu5g02020 |Afu5g04330 |Afu5g09910 |Afu5g14680 |Afu6g08360 |Afu6g10660 |MORE |
Carvalho ND, et al. (2012) Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress. BMC Genomics 13:350
| Genomic expression study | A. niger | |amyR |hacA |
Champer J, et al. (2012) Protein targets for broad-spectrum mycosis vaccines: quantitative proteomic analysis of Aspergillus and Coccidioides and comparisons with other fungal pathogens. Ann N Y Acad Sci 1273(1):44-51
| Large-scale protein detection | A. fumigatus | |alp2 |aspf9 |bgt2 |cat1 |cbhA |cpdS |ecm33 |gel4 |pep1 |phoA |sxa2 |
Delmas S, et al. (2012) Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PLoS Genet 8(8):e1002875
| Genomic expression study | A. niger | |cbhA |creA |eglA |glaA |xlnR |xynA |xynB |xyrA |
Etxebeste O, et al. (2012) GmcA Is a Putative Glucose-Methanol-Choline Oxidoreductase Required for the Induction of Asexual Development in Aspergillus nidulans. PLoS One 7(7):e40292
| Large-scale protein detection | A. nidulans | |AN3954 |AN5907 |AN6048 |aciA |acuN |brlA |citA |fbaA |flbB |flbD |flbE |galF |gdhA |gldB |MORE |
Farnell E, et al. (2012) Expression and secretion of Aspergillus fumigatus proteases are regulated in response to different protein substrates. Fungal Biol 116(9):1003-12
| Large-scale protein detection | A. fumigatus | |alp1 |lap1 |mep |
Gibbons JG, et al. (2012) The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr Biol 22(15):1403-9
| Computational analysis |
Gonzalez M, et al. (2012) High abundance of Serine/Threonine-rich regions predicted to be hyper-O-glycosylated in the secretory proteins coded by eight fungal genomes. BMC Microbiol 12:213
| Computational analysis |
Hagag S, et al. (2012) Transcriptional and Proteomic Analysis of the Aspergillus fumigatus DeltaprtT Protease-Deficient Mutant. PLoS One 7(4):e33604
| Large-scale protein detection, Genomic expression study | A. fumigatus | |Afu2g01250 |Afu4g03490 |acuM |alp1 |cyp51B |erg3 |hapX |mirB |prtT |sidA |srbA |sreA |
Keiblinger KM, et al. (2012) Soil metaproteomics - Comparative evaluation of protein extraction protocols. Soil Biol Biochem 54(15-10):14-24
| Large-scale protein detection |
Krijgsheld P, et al. (2012) Spatially Resolving the Secretome within the Mycelium of the Cell Factory Aspergillus niger. J Proteome Res 11(5):2807-18
| Genomic expression study | A. niger | |An01g00210 |An01g00610 |An01g01920 |An01g11670 |An01g14600 |An01g15200 |An02g03900 |An02g11890 |An03g06870 |An04g08550 |An06g01000 |An07g00550 |An07g07630 |An07g08940 |MORE |
Kwon MJ, et al. (2012) The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger. BMC Genomics 13:701
| Genomic expression study | A. niger | |An01g00560 |An01g03190 |An01g03820 |An01g04320 |An01g04730 |An01g05200 |An01g06670 |An01g08170 |An01g08460 |An01g08870 |An01g13070 |An01g13220 |An01g14250 |An02g01510 |MORE |
Magnani Dinamarco T, et al. (2012) Aspergillus fumigatus calcineurin interacts with a nucleoside diphosphate kinase. Microbes Infect 14(11):922-9
| Large-scale protein interaction | A. fumigatus | |Afu1g02550 |Afu1g03390 |Afu1g03510 |Afu1g05390 |Afu1g06340 |Afu1g09100 |Afu1g15020 |Afu2g09210 |Afu2g10090 |Afu3g04220 |Afu3g08470 |Afu4g03410 |Afu5g03020 |Afu5g10550 |MORE |
Muller S, et al. (2012) Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression. BMC Genomics 13:519
| Genomic expression study | A. fumigatus | |Afu1g01490 |Afu1g04062 |Afu1g04160 |Afu1g12170 |Afu4g04410 |Afu4g14440 |Afu6g13930 |Afu8g00490 |Afu8g01640 |fma-PKS |ftmA |glpV |mpkA |nrps11 |MORE |
Nishida H (2012) Conservation of nucleosome positions in duplicated and orthologous gene pairs. ScientificWorldJournal 2012:298174
| Computational analysis | A. fumigatus | |Afu1g00150 |Afu1g00420 |Afu1g00440 |Afu1g00450 |Afu1g00470 |Afu1g00530 |Afu1g00550 |Afu1g00580 |Afu1g00650 |Afu1g00910 |Afu1g00920 |Afu1g01050 |Afu1g02550 |Afu1g02730 |MORE |
Nitsche BM, et al. (2012) The carbon starvation response of Aspergillus niger during submerged cultivation: Insights from the transcriptome and secretome. BMC Genomics 13:380
| Genomic expression study | A. niger | |An01g01720 |An01g01750 |An01g01920 |An01g03090 |An01g04560 |An01g08470 |An01g14920 |An02g00090 |An02g00850 |An02g01550 |An02g03340 |An02g04690 |An02g13180 |An02g13740 |MORE |
Ogawa M, et al. (2012) ManR, a novel Zn(II)(2)Cys(6) transcriptional activator, controls the beta-mannan utilization system in Aspergillus oryzae. Fungal Genet Biol 49(12):987-95
| Genomic expression study | A. oryzae | |AO090005000743 |AO090020000141 |AO090038000445 |aglB |ameA |bgl5 |cutL |manD |manG |melO |mndB |mndD |
Saykhedkar S, et al. (2012) A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover. Biotechnol Biofuels 5(1):52
| Large-scale protein localization, Large-scale protein detection | A. nidulans | |AN0012 |AN0285 |AN0297 |AN0392 |AN0423 |AN0458 |AN0567 |AN0688 |AN0759 |AN0768 |AN0776 |AN0843 |AN10040 |AN10223 |MORE |
Suh MJ, et al. (2012) Development stage-specific proteomic profiling uncovers small, lineage specific proteins most abundant in the Aspergillus Fumigatus conidial proteome. Proteome Sci 10(1):30
| Large-scale protein detection | A. fumigatus | |Afu1g13670 |Afu1g13780 |Afu2g13530 |Afu3g09030 |Afu4g02805 |Afu4g07710 |Afu4g08240 |Afu4g08960 |Afu6g05210 |Afu6g08360 |Afu6g12000 |Afu8g00550 |arp1 |aspf22 |MORE |
Terabayashi Y, et al. (2012) Conserved and specific responses to hypoxia in Aspergillus oryzae and Aspergillus nidulans determined by comparative transcriptomics. Appl Microbiol Biotechnol 93(1):305-17
| Genomic expression study | A. nidulans | |AN0330 |AN0868 |AN1149 |AN1689 |AN3030 |AN3429 |AN5775 |AN5913 |AN6088 |AN7141 |AN7295 |AN8616 |AN8764 |AN9303 |MORE |
| | A. oryzae | |AO090003000024 |AO090003000661 |AO090003000751 |AO090003001055 |AO090005001196 |AO090005001358 |AO090009000219 |AO090009000557 |AO090011000306 |AO090011000755 |AO090011000766 |AO090012000626 |AO090012000675 |AO090020000048 |MORE |
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