| Reference | Literature Topic | Genes Addressed |
|---|
Oh YT, et al. (2010) Proteomic analysis of early phase of conidia germination in Aspergillusnidulans. Fungal Genet Biol 47(3):246-253
  | Large-scale protein detection | |AN0183 |AN0641 |AN1047 |AN1270 |AN2306 |AN2315 |AN2932 |AN3973 |AN4073 |AN4105 |AN4288 |AN4430 |AN5217 |AN5564 |MORE |
Basheer A, et al. (2009) A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions. Nucleic Acids Res 37(6):e42
 | Other genomic analysis | |aflR |areA |niaD |niiA |
Cao W, et al. (2009) Using a new GPI-anchored-protein identification system to mine the protein databases of Aspergillus fumigatus, Aspergillus nidulans, and Aspergillus oryzae. J Gen Appl Microbiol 55(5):381-93
| Computational analysis | |AN1532 |AN4049 |AN8484 |amyD |amyE |chiA |ecmA |
Coutinho PM, et al. (2009) Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genet Biol 46 Suppl 1:S161-S169
| Other genomic analysis, Computational analysis | |AN0280 |AN0452 |AN0711 |AN10060 |AN1041 |AN10419 |AN1043 |AN10505 |AN10919 |AN10935 |AN11054 |AN1107 |AN11078 |AN11679 |MORE |
Flipphi M, et al. (2009) Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp. Fungal Genet Biol 46 Suppl 1:S19-S44
| Other genomic analysis, Computational analysis | |AN0285 |AN0688 |AN0746 |AN0896 |AN1003 |AN11009 |AN11085 |AN11096 |AN11941 |AN11942 |AN1543 |AN1568 |AN1888 |AN2295 |MORE |
Hagiwara D, et al. (2009) Transcriptional profiling for Aspergillusnidulans HogA MAPK signaling pathway in response to fludioxonil and osmotic stress. Fungal Genet Biol 46(11):868-78
| Comparative genomic hybridization, Genomic expression study | |AN0054 |AN0167 |AN0997 |AN10303 |AN11314 |AN1301 |AN1666 |AN1711 |AN2084 |AN2792 |AN3048 |AN3055 |AN3357 |AN3358 |MORE |
Kelly DE, et al. (2009) The CYPome (Cytochrome P450 complement) of Aspergillus nidulans. Fungal Genet Biol 46 Suppl 1:S53-61
| Computational analysis | |CYP503B1 |CYP504E4P |CYP505A8 |CYP5073A1 |CYP5076A1 |CYP5077A1 |CYP5078A3 |CYP5080B1 |CYP5080D1 |CYP5095B1 |CYP5116B1 |CYP5125A1 |CYP5128A1 |CYP52G1 |MORE |
Miskei M, et al. (2009) Annotation of stress-response proteins in the aspergilli. Fungal Genet Biol 46 Suppl 1:S105-20
| Other genomic analysis, Computational analysis | |AN1358 |AN2067 |AN4483 |AN4581 |AN4716 |AN4896 |AN6006 |AN6892 |AN8836 |AN9034 |atfA |catB |enaA |enaB |MORE |
Salazar M, et al. (2009) Uncovering transcriptional regulation of glycerol metabolism in Aspergilli through genome-wide gene expression data analysis. Mol Genet Genomics 282(6):571-86
| Comparative genomic hybridization | |AN0051 |AN0129 |AN0485 |AN10075 |AN10078 |AN1014 |AN1050 |AN10520 |AN10981 |AN11994 |AN11995 |AN1396 |AN1726 |AN2133 |MORE |
Sato I, et al. (2009) The glutathione system of Aspergillus nidulans involves a fungus-specific glutathione S-transferase. J Biol Chem 284(12):8042-53
| Large-scale protein detection | |AN0179 |AN10220 |AN10223 |AN10249 |AN10273 |AN10379 |AN10695 |AN1222 |AN1523 |AN1595 |AN1752 |AN3058 |AN3255 |AN3298 |MORE |
Shimizu M, et al. (2009) Proteomic analysis of Aspergillus nidulans cultured under hypoxic conditions. Proteomics 9(1):7-19
| Large-scale protein detection | |AN0271 |AN0688 |AN10202 |AN10230 |AN1222 |AN1409 |AN1752 |AN1923 |AN1965 |AN2272 |AN2343 |AN2440 |AN2448 |AN2968 |MORE |
de Groot PW, et al. (2009) Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans. Fungal Genet Biol 46 Suppl 1:S72-81
| Other genomic analysis, Computational analysis | |AN0221 |AN0245 |AN0299 |AN0509 |AN0517 |AN0541 |AN0549 |AN0550 |AN0779 |AN0799 |AN0940 |AN10309 |AN10502 |AN1069 |MORE |
Andersen MR, et al. (2008) A trispecies Aspergillus microarray: comparative transcriptomics of three Aspergillus species. Proc Natl Acad Sci U S A 105(11):4387-92
| Other genomic analysis, Genomic expression study | |AN0250 |AN0280 |AN0423 |AN10124 |AN10169 |AN1677 |AN3184 |AN3432 |AN4148 |AN4590 |AN7193 |AN8400 |AN8790 |AN9064 |MORE |
David H, et al. (2008) Analysis of Aspergillus nidulans metabolism at the genome-scale. BMC Genomics 9:163
| Computational analysis | |AN0034 |AN0046 |AN0050 |AN0072 |AN0092 |AN0252 |AN0259 |AN0271 |AN0285 |AN0300 |AN0314 |AN0318 |AN0357 |AN0395 |MORE |
Levasseur A, et al. (2008) FOLy: an integrated database for the classification and functional annotation of fungal oxidoreductases potentially involved in the degradation of lignin and related aromatic compounds. Fungal Genet Biol 45(5):638-45
| Other genomic analysis | |AN1642 |AN2175 |AN2704 |AN3206 |AN3229 |AN4006 |AN4212 |AN5281 |AN6445 |AN7068 |AN7230 |AN7389 |AN7408 |AN7890 |MORE |
Panagiotou G, et al. (2008) Systems analysis unfolds the relationship between the phosphoketolase pathway and growth in Aspergillus nidulans. PLoS ONE 3(12):e3847
| Genomic expression study | |AN0158 |AN2165 |AN2555 |AN6798 |phk |
Savoldi M, et al. (2008) Farnesol induces the transcriptional accumulation of the Aspergillus nidulans Apoptosis-Inducing Factor (AIF)-like mitochondrial oxidoreductase. Mol Microbiol 70(1):44-59
| Comparative genomic hybridization | |AN4094 |AN4500 |AN4923 |AN5862 |AN6973 |AN7500 |AN7892 |acuG |aifA |alg8 |atgH |atp20 |bop1 |cct1 |MORE |
Silva EM, et al. (2008) Identification of genes differentially expressed in a strain of the mold Aspergillus nidulans carrying a loss-of-function mutation in the palA gene. Can J Microbiol 54(10):803-11
| Genomic expression study | |AN2267 |AN2301 |AN4402 |AN4615 |AN5407 |AN5573 |AN5969 |AN7530 |AN8639 |gelD |pacA |palA |plcB |ubi4 |
Hortschansky P, et al. (2007) Interaction of HapX with the CCAAT-binding complex--a novel mechanism of gene regulation by iron. EMBO J 26(13):3157-68
| Large-scale protein detection | |AN0083 |AN0443 |AN0747 |AN10139 |AN10144 |AN10224 |AN1152 |AN1868 |AN2903 |AN3161 |AN3206 |AN3805 |AN4288 |AN4572 |MORE |
Kim Y, et al. (2007) Proteome map of Aspergillus nidulans during osmoadaptation. Fungal Genet Biol 44(9):886-95
| Large-scale protein detection | |AN0641 |AN0656 |AN1503 |AN1769 |AN2204 |AN2882 |AN2968 |AN4029 |AN5342 |AN6089 |AN7254 |AN7484 |AN7799 |AN8690 |MORE |
Malavazi I, et al. (2007) Transcriptome analysis of the Aspergillus nidulans AtmA (ATM, Ataxia-Telangiectasia mutated) null mutant. Mol Microbiol 66(1):74-99
| Comparative genomic hybridization | |AN0062 |AN0067 |AN0085 |AN0096 |AN0226 |AN0229 |AN0271 |AN0306 |AN0381 |AN0401 |AN0421 |AN0424 |AN0467 |AN0566 |MORE |
Bok JW, et al. (2006) Genomic mining for Aspergillus natural products. Chem Biol 13(1):31-7
| Comparative genomic hybridization | |AN11012 |AN11014 |AN11017 |AN11021 |AN11310 |AN11354 |AN11572 |AN11573 |AN12326 |AN12327 |AN1588 |AN1589 |AN1590 |AN1591 |MORE |
Lafon A, et al. (2006) G-protein and cAMP-mediated signaling in aspergilli: a genomic perspective. Fungal Genet Biol 43(7):490-502
| Other genomic analysis | |capA |cyaA |fadA |flbA |ganA |ganB |gpgA |gprC |gprD |gprH |gprI |gprJ |gprM |gprN |MORE |
Mogensen J, et al. (2006) Transcription analysis using high-density micro-arrays of Aspergillus nidulans wild-type and creA mutant during growth on glucose or ethanol. Fungal Genet Biol 43(8):593-603
| Comparative genomic hybridization | |AN1133 |acuD |adB |agdE |alcA |alcC |aldA |amdS |avaA |cipC |cpa |creA |facA |facC |MORE |
Pocsi I, et al. (2005) Comparison of gene expression signatures of diamide, H2O2 and menadione exposed Aspergillus nidulans cultures--linking genome-wide transcriptional changes to cellular physiology. BMC Genomics 6:182
| Genomic expression study | |AN4483 |aoxA |atfA |cpcA |gstA |jlbA |sconC |sodA |
Sims AH, et al. (2005) Transcriptome analysis of recombinant protein secretion by Aspergillus nidulans and the unfolded-protein response in vivo. Appl Environ Microbiol 71(5):2737-47
| Genomic expression study | |AN0235 |AN0243 |AN0248 |AN0411 |AN0643 |AN0810 |AN0834 |AN0847 |AN0854 |AN0930 |AN10202 |AN10266 |AN10354 |AN10367 |MORE |
Muthuvijayan V and Marten MR (2004) In silico reconstruction of nutrient-sensing signal transduction pathways in Aspergillus nidulans. In Silico Biol 4(4):605-31
| Other genomic analysis, Computational analysis | |AN0090 |AN0127 |AN0144 |AN0576 |AN0664 |AN1015 |AN1632 |AN1760 |AN1962 |AN1973 |AN2067 |AN2076 |AN2093 |AN2130 |MORE |
Sims AH, et al. (2004) Use of expressed sequence tag analysis and cDNA microarrays of the filamentous fungus Aspergillus nidulans. Fungal Genet Biol 41(2):199-212
| Comparative genomic hybridization | |actA |acuD |acuE |acuF |acuG |aglA |alcA |alcC |aldA |benA |catB |chiB |chsB |chsD |MORE |
Tanzer MM, et al. (2003) Global nutritional profiling for mutant and chemical mode-of-action analysis in filamentous fungi. Funct Integr Genomics 3(4):160-70
| Genomic expression study | |areA |
Osherov N, et al. (2002) Identification of conidial-enriched transcripts in Aspergillus nidulans using suppression subtractive hybridization. Fungal Genet Biol 37(2):197-204
| Genomic expression study | |abaA |acuD |acuF |brlA |cetA |cetJ |cetL |stuA |
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