Genome-wide Analysis papers

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Genome-wide AnalysisProteome-wide Analysis
Comparative genomic hybridizationLarge-scale protein detection
Computational analysisLarge-scale protein interaction
Genomic co-immunoprecipitation studyLarge-scale protein localization
Genomic expression studyLarge-scale protein modification
Large-scale genetic interactionOther large-scale proteomic analysis
Large-scale phenotype analysis 
Other genomic analysis 

Result Page : 12345678Next


ReferenceLiterature TopicSpeciesGenes Addressed
Champer J, et al. (2016) Proteomic Analysis of Pathogenic Fungi Reveals Highly Expressed Conserved Cell Wall Proteins. J Fungi (Basel) 2(1)
AspGD Papers Entry  Pubmed Entry  
Large-scale protein detectionA. fumigatus |aspf9 |bgt1 |bgt2 |ecm33 |gel1
Manzanares-Miralles L, et al. (2016) Quantitative proteomics reveals the mechanism and consequence of gliotoxin-mediated dysregulation of the methionine cycle in Aspergillus niger. J Proteomics 131:149-62
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Large-scale protein detectionA. niger |An01g01720 |An01g01750 |An01g14920 |An02g01830 |An02g04690 |An02g06300 |An02g07430 |An02g10750 |An02g11940 |An02g13920 |An03g00500 |An03g01010 |An04g01800 |An04g01870 |MORE
Baldin C, et al. (2015) Comparative proteomics of a tor inducible Aspergillus fumigatus mutant reveals involvement of the Tor kinase in iron regulation. Proteomics 15(13):2230-43
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Other large-scale proteomic analysisA. fumigatus |hapX |tor
Emri T, et al. (2015) Core oxidative stress response in Aspergillus nidulans. BMC Genomics 16:478
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Genomic expression studyA. nidulans |atfA
Oiartzabal-Arano E, et al. (2015) Beyond asexual development: modifications in the gene expression profile caused by the absence of the Aspergillus nidulans transcription factor FlbB. Genetics 199(4):1127-42
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Genomic expression studyA. nidulans |brlA |flbB |flbD
Park HS, et al. (2015) Velvet-mediated repression of beta-glucan synthesis in Aspergillus nidulans spores. Sci Rep 5:10199
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Genomic expression studyA. nidulans |fksA |velB |vosA
Shin KS, et al. (2015) Proteomic analyses reveal the key roles of BrlA and AbaA in biogenesis of gliotoxin in Aspergillus fumigatus. Biochem Biophys Res Commun 463(3):428-33
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Large-scale protein detectionA. fumigatus |abaA |brlA |gliM |gliP |gliT |gliZ |wetA
Sueiro-Olivares M, et al. (2015) Aspergillus fumigatus transcriptome response to a higher temperature during the earliest steps of germination monitored using a new customized expression microarray. Microbiology 161(Pt 3):490-502
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Genomic expression studyA. fumigatus |gliP |gliZ |hapX |niaD |niiA |sidC |sidD |sod3 |sreA
Udatha DB, et al. (2015) Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae. BMC Syst Biol 9(1):77
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Genomic expression studyA. oryzae |amyR |xlnR
Battaglia E, et al. (2014) The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes. Res Microbiol 165(7):531-40
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Genomic expression studyA. niger |alr |araR |gndA |gndB |gsdA |ladA |lxrA |pglA |rbkA |rbtA |rpeA |rpiA |rpiB |tal1 |MORE
Canovas D, et al. (2014) The histone acetyltransferase GcnE (GCN5) plays a central role in the regulation of Aspergillus asexual development. Genetics 197(4):1175-89
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Genomic expression studyA. nidulans |alcA |brlA |flbA |flbB |flbC |flbD |gcnE |hhtA |sagA
Chung D, et al. (2014) ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence. PLoS Pathog 10(11):e1004487
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Genomic expression studyA. fumigatus |srbA |srbB
Hagiwara D, et al. (2014) The role of AtfA and HOG MAPK pathway in stress tolerance in conidia of Aspergillus fumigatus. Fungal Genet Biol 73:138-49
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Genomic expression studyA. fumigatus |Afu1g01175 |Afu1g01490 |Afu1g02040 |Afu1g14230 |Afu2g00200 |Afu2g14330 |Afu2g14870 |Afu3g01210 |Afu3g02050 |Afu3g03040 |Afu3g10410 |Afu4g00290 |Afu4g00540 |Afu4g00730 |MORE
Krishnan K, et al. (2014) Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus. BMC Genomics 15:159
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Other genomic analysisA. fumigatus |yvc1
Krohn NG, et al. (2014) The Aspergillus nidulans ATM kinase regulates mitochondrial function, glucose uptake and the carbon starvation response. G3 (Bethesda) 4(1):49-62
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Genomic expression studyA. nidulans |atmA |snf1 |tubA |xprG
Kroll K, et al. (2014) Identification of hypoxia-inducible target genes of Aspergillus fumigatus by transcriptome analysis reveals cellular respiration as an important contributor to hypoxic survival. Eukaryot Cell 13(9):1241-53
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Genomic expression studyA. fumigatus |cox5b |fhpA |fphA |frdA |niaD |niiA |osm1 |rcfB |srbA
Losada L, et al. (2014) Large-scale transcriptional response to hypoxia in Aspergillus fumigatus observed using RNAseq identifies a novel hypoxia regulated ncRNA. Mycopathologia 178(5-6):331-9
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Genomic expression studyA. fumigatus |Afu-182 |insA
Martins I, et al. (2014) Elucidating how the saprophytic fungus Aspergillus nidulans uses the plant polyester suberin as carbon source. BMC Genomics 15:613
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Genomic expression studyA. nidulans |AN2099 |AN2366 |AN2395 |AN3246 |AN3351 |AN4245 |AN4825 |AN5309 |AN5879 |AN6273 |AN8043 |AN8046 |AN8445 |AN8477 |MORE
Nishida H (2014) Conserved and varied dinucleotide sequences in the genomes of three Aspergillus species. Recent Adv DNA Gene Seq 8(1):10-4
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Computational analysis
O'Keeffe G, et al. (2014) RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus. BMC Genomics 15:894
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Genomic expression studyA. fumigatus |gliT
Owens RA, et al. (2014) A proteomic approach to investigating gene cluster expression and secondary metabolite functionality in Aspergillus fumigatus. PLoS One 9(9):e106942
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Large-scale protein detectionA. fumigatus |Afu1g00420 |Afu1g00990 |Afu1g01000 |Afu1g01010 |Afu1g02070 |Afu1g02290 |Afu1g02550 |Afu1g02980 |Afu1g03100 |Afu1g03390 |Afu1g03510 |Afu1g03610 |Afu1g03720 |Afu1g04070 |MORE
Ramsubramaniam N, et al. (2014) The phosphoproteome of Aspergillus nidulans reveals functional association with cellular processes involved in morphology and secretion. Proteomics 14(21-22):2454-9
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Large-scale protein modificationA. nidulans |pkaA |schA |snf1
Wiemann P, et al. (2014) Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus. Front Microbiol 5:530
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Genomic expression studyA. fumigatus |gatA |hapX |sreA
Yin C, et al. (2014) Genomic analysis of the aconidial and high-performance protein producer, industrially relevant Aspergillus niger SH2 strain. Gene 541(2):107-14
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Other genomic analysisA. niger |prpA
de Castro PA, et al. (2014) ChIP-seq reveals a role for CrzA in the Aspergillus fumigatus high-osmolarity glycerol response (HOG) signalling pathway. Mol Microbiol 94(3):655-74
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Genomic co-immunoprecipitation studyA. fumigatus |atgI |cbkA |crzA |ddiA |flcA |phkB |sakA |schA |snxA |sskB
Adav SS, et al. (2013) Proteomic analysis of temperature dependent extracellular proteins from Aspergillus fumigatus grown under solid-state culture condition. J Proteome Res 12(6):2715-31
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Large-scale protein detectionA. fumigatus |Afu1g01120 |Afu1g01300 |Afu1g01660 |Afu1g04730 |Afu1g04820 |Afu1g06910 |Afu1g09110 |Afu1g09470 |Afu1g09900 |Afu1g10790 |Afu1g11400 |Afu1g12560 |Afu1g14710 |Afu1g14950 |MORE
Amich J, et al. (2013) Regulation of sulphur assimilation is essential for virulence and affects iron homeostasis of the human-pathogenic mould Aspergillus fumigatus. PLoS Pathog 9(8):e1003573
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Genomic expression studyA. fumigatus |metR
Andersen MR, et al. (2013) Accurate prediction of secondary metabolite gene clusters in filamentous fungi. Proc Natl Acad Sci U S A 110(1):E99-107
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Genomic expression studyA. nidulans |AN11080 |AN1242 |AN9002
Colabardini AC, et al. (2013) Functional characterization of Aspergillus nidulans ypkA, a homologue of the mammalian kinase SGK. PLoS One 8(3):e57630
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Genomic expression studyA. nidulans |AN10790 |AN11048 |AN12017 |AN1825 |AN1857 |AN1858 |AN1865 |AN1907 |AN2045 |AN2200 |AN2201 |AN2781 |AN2860 |AN2864 |MORE
Coradetti ST, et al. (2013) Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. Microbiologyopen 2(4):595-609
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Genomic expression studyA. nidulans |AN0245 |AN0732 |AN0771 |AN0847 |AN10124 |AN1066 |AN1163 |AN1792 |AN2112 |AN2528 |AN2814 |AN2951 |AN3498 |AN3555 |MORE
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