A. nidulans AN4236 Summary

Help

Summary
Locus History Literature Gene Ontology Phenotype Protein
      
AN4236 BASIC INFORMATION [ View References ]
Systematic Name, Reference Strain AN4236 (A. nidulans FGSC A4)
Alias ANID_04236, ANIA_04236
Feature Type ORF, Uncharacterized
Description Probable 26S proteasome subunit and member of the CDC48/PAS1/SEC18 family of ATPases; transcript upregulated in response to camptothecin (1)
Literature
Orthologous genes in Aspergillus species A. oryzae RIB40 Ortholog(s) : AO090001000434
A. fumigatus Af293 Ortholog(s) : Afu1g06170
A. niger CBS 513.88 Ortholog(s) : An18g05230
View ortholog cluster : 20 genes among 20 Aspergillus-related species/strains
View alignment
Ortholog(s) in non-AspGD species N. crassa (rpt-5) ; C. albicans (RPT5) ; S. pombe (rpt5) ; S. cerevisiae (RPT5)
Chromosomal Location
GBrowse for A. nidulans FGSC A4
Click on map for expanded view
AN4236
GBrowse

GO Annotations View all AN4236 GO evidence and references

  Molecular Function
 
    Computational * ATP binding (IEA with EBI: IPR003959)
* hydrolase activity (IEA with EBI: IPR005937)
* nucleoside-triphosphatase activity (IEA with EBI: IPR003593)
* nucleotide binding (IEA with EBI: IPR003593)

  Biological Process
 
    Computational * positive regulation of RNA polymerase II transcriptional preinitiation complex assembly (IEA with S. cerevisiae: RPT5)
* proteasome regulatory particle assembly (IEA with S. cerevisiae: RPT5)
* ubiquitin-dependent protein catabolic process (IEA with S. cerevisiae: RPT5)

  Cellular Component
 
    Computational * cytosol (IEA with S. pombe: rpt5)
* proteasome regulatory particle, base subcomplex (IEA with S. cerevisiae: RPT5)
Sequence Information Collapse ChrII_A_nidulans_FGSC_A4:1662405 to 1660826 | GBrowse
Note: this feature is encoded on the Crick strand.
  Last Update Coordinates: 2010-05-21 | Sequence: 2009-03-02

  Subfeature Details
Relative
Coordinates
Chromosomal
Coordinates
Most Recent Update
CoordinatesSequence
5' UTR-89to-11,662,494to1,662,4062012-08-302012-08-30
CDS1to3231,662,405to1,662,0832010-05-212009-03-02
Intron324to4501,662,082to1,661,9562010-05-212009-03-02
CDS451to8661,661,955to1,661,5402010-05-212009-03-02
Intron867to9211,661,539to1,661,4852010-05-212009-03-02
CDS922to15801,661,484to1,660,8262010-05-212009-03-02
3' UTR1581to17281,660,825to1,660,6782012-08-302012-08-30

Retrieve Sequences
Sequence Analysis Tools
Maps & Displays
RNA-Seq Data JBrowse
External Links CADRE | Fungal Orthologs | FungiDB | GenBank (1, 2, 3, 4, 5) | GenBank version 4 | KO Cassette Available | TrEMBL
Primary AspGDID ASPL0000010049
ADDITIONAL INFORMATION for AN4236
Locus HistoryGene/Sequence Resources
LOCUS SUMMARY NOTES for AN4236
Description from CADRE : hypothetical protein similar to TAT-binding protein 1

Last Updated: 2010-07-06

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for AN4236]
1)Malavazi I, et al. (2006) Transcriptome analysis of Aspergillus nidulans exposed to camptothecin-induced DNA damage. Eukaryot Cell 5(10):1688-704
AspGD Papers Entry  Pubmed Entry  


Return to AspGD
Send a Message to the AspGD Curators