Index of /download/sequence/A_nidulans_FGSC_A4

Icon  Name                    Last modified      Size  Description
[DIR] Parent Directory                             -   
[DIR] archive/                29-Jul-2010 20:42    -   
[DIR] current/                29-Jul-2010 20:42    -   

This directory contains the most current version of Aspergillus nidulans genomic sequences.


These files in the current/ subdirectory are updated weekly:


* Chromosomal sequence:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_chromosomes.fasta.gz   

* Sequence with no introns for all ORFs:             
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_orf_coding.fasta.gz         

* Sequence with introns for all ORFs:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_orf_genomic.fasta.gz 
                
* Sequence with introns and untranslated region 1000 bp upstream and
downstream for all ORFs:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_orf_genomic_1000.fasta.gz  

* Translation of all ORFs:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_orf_trans_all.fasta.gz

* Sequence of tRNAs (predicted using tRNAscan-SE), includes sequence of any introns:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_other_features_genomic.fasta.gz
Note: sequence of other non-ORF feature types will be added to this file when these features 
are added to AspGD in the future.

* Sequence of tRNAs (predicted using tRNAscan-SE), with introns removed:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_other_features_no_introns.fasta.gz
Note: sequence of other non-ORF feature types will be added to this file when these features 
are added to AspGD in the future.

* Genomic sequence of tRNAs (predicted using tRNAscan-SE), plus region 
1000 bp upstream and downstream:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_other_features_genomic_1000.fasta.gz
Note: sequence of other non-ORF feature types will be added to this file when these features 
are added to AspGD in the future.

* Sequence between annotated chromosomal features:
                A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_not_features.fasta.gz  
                
The notation "sXX-mYY-rZZ" in the filename indicates the genome 
version to which data in the file corresponds.
Detailed explanation about the genome version can be found at: 
http://www.aspgd.org/help/SequenceHelp.shtml#Anids_versions 


This file is static (not updated):

* Sequence with no introns for ORFs from the Broad annotation updates
(2009) that could not be mapped completely to the Version 4
chromosomal sequence, and which were therefore excluded from the
initial release of Version 5 of the annotation.  The sequence in this
file is based on the Version 3 contigs.
     A_nidulans_FGSC_A4_unmapped_Broad_CDS.fasta.gz


The archived versions of the sequences are available in the archive/ subdirectory.
The sequences are checked for changes weekly and a new
file is added whenever there has been a change.  The date of the
update or the genome version is included in the filename.




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The files in this directory are in FASTA format.

All files are gzip compressed. There are several freely available
software options for decompressing gzipped files using Windows.  The
software and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
   
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the AspGD web site at:
http://www.aspergillusgenome.org/help/SequenceHelp.shtml

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